Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 12 de 12
Filter
Add more filters










Publication year range
1.
Comput Biol Med ; 173: 108345, 2024 May.
Article in English | MEDLINE | ID: mdl-38564852

ABSTRACT

Due to their widespread prevalence and impact on quality of life, cardiovascular diseases (CVD) pose a considerable global health burden. Early detection and intervention can reduce the incidence, severity, and progression of CVD and prevent premature death. The application of machine learning (ML) techniques to early CVD detection is therefore a valuable approach. In this paper, A stack-based ensemble classifier with an aggregation layer and the dependent ordered weighted averaging (DOWA) operator is proposed for detecting cardiovascular diseases. We propose transforming features using the Johnson transformation technique and normalizing feature distributions. Three diverse first-level classifiers are selected based on their accuracy, and predictions are combined using the aggregation layer and DOWA. A linear support vector machine (SVM) meta-classifier makes the final classification. Adding the aggregation layer to the stacking classifier improves classification accuracy significantly, according to the study. The accuracy is enhanced by 5%, resulting in an impressive overall accuracy of 94.05%. Moreover, the proposed system significantly increases the area under the receiver operating characteristic (ROC) curve compared to recent studies, reaching 97.14%. It further reinforces the classifier's reliability and effectiveness in classifying cardiovascular disease by distinguishing between positive and negative instances. With improved accuracy and a high area under the curve (AUC), the proposed classifier exhibits robustness and superior performance in the detection of cardiovascular diseases.


Subject(s)
Cardiovascular Diseases , Humans , Cardiovascular Diseases/diagnosis , Quality of Life , Reproducibility of Results , Machine Learning , ROC Curve
2.
J Imaging ; 9(11)2023 Nov 13.
Article in English | MEDLINE | ID: mdl-37998094

ABSTRACT

Breast cancer's high mortality rate is often linked to late diagnosis, with mammograms as key but sometimes limited tools in early detection. To enhance diagnostic accuracy and speed, this study introduces a novel computer-aided detection (CAD) ensemble system. This system incorporates advanced deep learning networks-EfficientNet, Xception, MobileNetV2, InceptionV3, and Resnet50-integrated via our innovative consensus-adaptive weighting (CAW) method. This method permits the dynamic adjustment of multiple deep networks, bolstering the system's detection capabilities. Our approach also addresses a major challenge in pixel-level data annotation of faster R-CNNs, highlighted in a prominent previous study. Evaluations on various datasets, including the cropped DDSM (Digital Database for Screening Mammography), DDSM, and INbreast, demonstrated the system's superior performance. In particular, our CAD system showed marked improvement on the cropped DDSM dataset, enhancing detection rates by approximately 1.59% and achieving an accuracy of 95.48%. This innovative system represents a significant advancement in early breast cancer detection, offering the potential for more precise and timely diagnosis, ultimately fostering improved patient outcomes.

3.
Multimed Tools Appl ; 81(16): 22185-22214, 2022.
Article in English | MEDLINE | ID: mdl-35002472

ABSTRACT

Smart city management is facing a new challenge from littered face masks during COVID-19 pandemic. Addressing the issues of detection and collection of this hazardous waste that is littered in public spaces and outside the controlled environments, usually associated with biomedical waste, is urgent for the safety of the communities around the world. Manual management of this waste is beyond the capabilities of governments worldwide as the geospatial scale of littering is very high and also because this contaminated litter is a health and safety issue for the waste collectors. In this paper, an autonomous biomedical waste management framework that uses edge surveillance and location intelligence for detection of the littered face masks and predictive modelling for emergency response to this problem is proposed. In this research a novel dataset of littered face masks in various conditions and environments is collected. Then, a new deep neural network architecture for rapid detection of discarded face masks on the video surveillance edge nodes is proposed. Furthermore, a location intelligence model for prediction of the areas with higher probability of hazardous litter in the smart city is presented. Experimental results show that the accuracy of the proposed model for detection of littered face masks in various environments is 96%, while the speed of processing is ten times faster than comparable models. The proposed framework can help authorities to plan for timely emergency response to scattering of hazardous material in residential environments.

4.
Front Robot AI ; 8: 612949, 2021.
Article in English | MEDLINE | ID: mdl-34476241

ABSTRACT

This paper examines how haptic technology, virtual reality, and artificial intelligence help to reduce the physical contact in medical training during the COVID-19 Pandemic. Notably, any mistake made by the trainees during the education process might lead to undesired complications for the patient. Therefore, training of the medical skills to the trainees have always been a challenging issue for the expert surgeons, and this is even more challenging in pandemics. The current method of surgery training needs the novice surgeons to attend some courses, watch some procedure, and conduct their initial operations under the direct supervision of an expert surgeon. Owing to the requirement of physical contact in this method of medical training, the involved people including the novice and expert surgeons confront a potential risk of infection to the virus. This survey paper reviews recent technological breakthroughs along with new areas in which assistive technologies might provide a viable solution to reduce the physical contact in the medical institutes during the COVID-19 pandemic and similar crises.

5.
Sensors (Basel) ; 18(3)2018 Feb 27.
Article in English | MEDLINE | ID: mdl-29495434

ABSTRACT

The present study designed skewed redundant accelerometers for a Measurement While Drilling (MWD) tool and executed auto-calibration, fault diagnosis and isolation of accelerometers in this tool. The optimal structure includes four accelerometers was selected and designed precisely in accordance with the physical shape of the existing MWD tool. A new four-accelerometer structure was designed, implemented and installed on the current system, replacing the conventional orthogonal structure. Auto-calibration operation of skewed redundant accelerometers and all combinations of three accelerometers have been done. Consequently, biases, scale factors, and misalignment factors of accelerometers have been successfully estimated. By defecting the sensors in the new optimal skewed redundant structure, the fault was detected using the proposed FDI method and the faulty sensor was diagnosed and isolated. The results indicate that the system can continue to operate with at least three correct sensors.

6.
Sensors (Basel) ; 17(1)2017 Jan 08.
Article in English | MEDLINE | ID: mdl-28075342

ABSTRACT

Human movement analysis is an important part of biomechanics and rehabilitation, for which many measurement systems are introduced. Among these, wearable devices have substantial biomedical applications, primarily since they can be implemented both in indoor and outdoor applications. In this study, a Trunk Motion System (TMS) using printed Body-Worn Sensors (BWS) is designed and developed. TMS can measure three-dimensional (3D) trunk motions, is lightweight, and is a portable and non-invasive system. After the recognition of sensor locations, twelve BWSs were printed on stretchable clothing with the purpose of measuring the 3D trunk movements. To integrate BWSs data, a neural network data fusion algorithm was used. The outcome of this algorithm along with the actual 3D anatomical movements (obtained by Qualisys system) were used to calibrate the TMS. Three healthy participants with different physical characteristics participated in the calibration tests. Seven different tasks (each repeated three times) were performed, involving five planar, and two multiplanar movements. Results showed that the accuracy of TMS system was less than 1.0°, 0.8°, 0.6°, 0.8°, 0.9°, and 1.3° for flexion/extension, left/right lateral bending, left/right axial rotation, and multi-planar motions, respectively. In addition, the accuracy of TMS for the identified movement was less than 2.7°. TMS, developed to monitor and measure the trunk orientations, can have diverse applications in clinical, biomechanical, and ergonomic studies to prevent musculoskeletal injuries, and to determine the impact of interventions.

7.
J Bioinform Comput Biol ; 12(4): 1450014, 2014 Aug.
Article in English | MEDLINE | ID: mdl-25152039

ABSTRACT

Protein-protein interactions (PPIs) are important for understanding the cellular mechanisms of biological functions, but the reliability of PPIs extracted by high-throughput assays is known to be low. To address this, many current methods use multiple evidence from different sources of information to compute reliability scores for such PPIs. However, they often combine the evidence without taking into account the uncertainty of the evidence values, potential dependencies between the information sources used and missing values from some information sources. We propose to formulate the task of scoring PPIs using multiple information sources as a multi-criteria decision making problem that can be solved using data fusion to model potential interactions between the multiple information sources. Using data fusion, the amount of contribution from each information source can be proportioned accordingly to systematically score the reliability of PPIs. Our experimental results showed that the reliability scores assigned by our data fusion method can effectively classify highly reliable PPIs from multiple information sources, with substantial improvement in scoring over conventional approach such as the Adjust CD-Distance approach. In addition, the underlying interactions between the information sources used, as well as their relative importance, can also be determined with our data fusion approach. We also showed that such knowledge can be used to effectively handle missing values from information sources.


Subject(s)
Computational Biology/methods , Protein Interaction Mapping/methods , Decision Making, Computer-Assisted , Gene Expression , High-Throughput Screening Assays , Reproducibility of Results
8.
ISA Trans ; 53(2): 230-40, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24315057

ABSTRACT

Complexity of industrial plants and their stringent environmental and safety regulations have necessitated early detection and isolation of process faults. All the existing fault isolation methods can be categorized into two general groups: model-based and data-based. Transfer entropy is a data-based method for measuring propagation direction of disturbance and finding its root cause. In this paper, a new transfer entropy-based method is proposed to isolate different process faults. The novelty of this paper lies in using the transfer entropy idea to generate distinct patterns of information flow among process variables, recognize their correlations in the context of the transferred information in any abnormal condition, and finally isolate different process faults. The experimental results clearly demonstrate the superiority of the proposed method to the conventional methods.

9.
Math Biosci ; 240(2): 148-60, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22824139

ABSTRACT

In current computational biology, assigning a protein domain to a fold class is a complicated and controversial task. It can be more challenging in the much harder task of correct identification of protein domain fold pattern solely through using extracted information from protein sequence. To deal with such a challenging problem, the concepts of hyperfold and interlaced folds are introduced for the first time. Each hyperfold is a set of interlaced folds with a centroid fold. These concepts are used to construct a framework for handling the uncertainty involved with the fold classification problem. In this approach, an unknown query protein is assigned to a hyperfold rather than a single fold. Ten different sequence based features are used to predicting the correct hyperfold. This architecture is featured by the Dempster-Shafer theory of evidence through the bodies of evidence and Dempster's rule of combination to combine the hyperfolds. The classification architecture thus developed was applied for identifying protein folds among the 27 famous SCOP fold patterns from a stringent well-known dataset. Compared with the existing predictors tested by the same benchmark dataset, our approach might achieve the better results.


Subject(s)
Amino Acid Sequence , Protein Folding , Proteins/chemistry , Algorithms , Databases, Protein , Protein Structure, Tertiary , Structure-Activity Relationship
10.
Comput Biol Chem ; 35(1): 1-9, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21216672

ABSTRACT

Protein function is related to its chemical reaction to the surrounding environment including other proteins. On the other hand, this depends on the spatial shape and tertiary structure of protein and folding of its constituent components in space. The correct identification of protein domain fold solely using extracted information from protein sequence is a complicated and controversial task in the current computational biology. In this article a combined classifier based on the information content of extracted features from the primary structure of protein has been introduced to face this challenging problem. In the first stage of our proposed two-tier architecture, there are several classifiers each of which is trained with a different sequence based feature vector. Apart from the application of the predicted secondary structure, hydrophobicity, van der Waals volume, polarity, polarizability, and different dimensions of pseudo-amino acid composition vectors in similar studies, the position specific scoring matrix (PSSM) has also been used to improve the correct classification rate (CCR) in this study. Using K-fold cross validation on training dataset related to 27 famous folds of SCOP, the 28 dimensional probability output vector from each evidence theoretic K-NN classifier is used to determine the information content or expertness of corresponding feature for discrimination in each fold class. In the second stage, the outputs of classifiers for test dataset are fused using Sugeno fuzzy integral operator to make better decision for target fold class. The expertness factor of each classifier in each fold class has been used to calculate the fuzzy integral operator weights. Results make it possible to provide deeper interpretation about the effectiveness of each feature for discrimination in target classes for query proteins.


Subject(s)
Computer Simulation , Position-Specific Scoring Matrices , Proteins/chemistry , Proteins/classification , Amino Acid Sequence , Molecular Sequence Data , Protein Folding , Protein Structure, Tertiary , Proteins/genetics
11.
J Theor Biol ; 269(1): 208-16, 2011 Jan 21.
Article in English | MEDLINE | ID: mdl-21040732

ABSTRACT

In this study, the predictors are developed for protein submitochondria locations based on various features of sequences. Information about the submitochondria location for a mitochondria protein can provide much better understanding about its function. We use ten representative models of protein samples such as pseudo amino acid composition, dipeptide composition, functional domain composition, the combining discrete model based on prediction of solvent accessibility and secondary structure elements, the discrete model of pairwise sequence similarity, etc. We construct a predictor based on support vector machines (SVMs) for each representative model. The overall prediction accuracy by the leave-one-out cross validation test obtained by the predictor which is based on the discrete model of pairwise sequence similarity is 1% better than the best computational system that exists for this problem. Moreover, we develop a method based on ordered weighted averaging (OWA) which is one of the fusion data operators. Therefore, OWA is applied on the 11 best SVM-based classifiers that are constructed based on various features of sequence. This method is called Mito-Loc. The overall leave-one-out cross validation accuracy obtained by Mito-Loc is about 95%. This indicates that our proposed approach (Mito-Loc) is superior to the result of the best existing approach which has already been reported.


Subject(s)
Computational Biology/methods , Databases, Protein , Mitochondria/metabolism , Mitochondrial Proteins/chemistry , Mitochondrial Proteins/metabolism , Sequence Analysis, Protein , Algorithms , Amino Acid Sequence , Protein Transport
12.
ISA Trans ; 41(3): 283-301, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12160343

ABSTRACT

In any autonomous mobile robot, one of the most important issues to be designed and implemented is environment perception. In this paper, a new approach is formulated in order to perform sensory data integration for generation of an occupancy grid map of the environment. This method is an extended version of the Bayesian fusion method for independent sources of information. The performance of the proposed method of fusion and its sensitivity are discussed. Map building simulation for a cylindrical robot with eight ultrasonic sensors and mapping implementation for a Khepera robot have been separately tried in simulation and experimental works. A new neural structure is introduced for conversion of proximity data that are given by Khepera IR sensors to occupancy probabilities. Path planning experiments have also been applied to the resulting maps. For each map, two factors are considered and calculated: the fitness and the augmented occupancy of the map with respect to the ideal map. The length and the least distance to obstacles were the other two factors that were calculated for the routes that are resulted by path planning experiments. Experimental and simulation results show that by using the new fusion formulas, more informative maps of the environment are obtained. By these maps more appropriate routes could be achieved. Actually, there is a tradeoff between the length of the resulting routes and their safety and by choosing the proper fusion function, this tradeoff is suitably tuned for different map building applications.


Subject(s)
Algorithms , Computer Simulation , Feedback , Models, Statistical , Robotics/instrumentation , Robotics/methods , Bayes Theorem , Fuzzy Logic , Motion , Neural Networks, Computer , Transducers
SELECTION OF CITATIONS
SEARCH DETAIL
...